Reconstitution of lamin assembly on nuclear pore complex-containing membranes
ai note: Central to postmitotic nuclear-lamina assembly and G1 genome organization, focusing on lamin assembly.
- free to read
- cites our lab
zheng lab reading list
this week: 79 top picks and 109 more worth a look.
78% free to read · 46 preprints · 37 reviews · 6 cite our lab
updated sep 30, 2:21 pmnext check thu oct 1, 9:07 am eastern time
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top picks 79
Remodelling of chromatin architecture and super-enhancer landscape in lamin A/C depleted HGSOC
ai note: Directly relevant to LAD remodeling, chromatin architecture, and nuclear lamina, fitting lab interests.
- free to read
- preprint
Lamin B1 Coordinates the Assembly of the Nuclear Lamina
ai note: Central to postmitotic nuclear-lamina assembly and G1 genome organization, specifically lamin assembly.
- free to read
scACORN: Context-engineered agent orchestration of specialized small language models for single-cell transcriptomic interpretation
ai note: Develops an AI agent for single-cell transcriptomic interpretation, directly relevant to AI in cell biology and genomics.
- free to read
- preprint
The Meiotic Spindle, Mechanisms of Chromosome Segregation and Aneuploidy in Aging Human Oocytes: An Update Review
ai note: Central to oocyte aging and chromosome segregation, directly addressing the meiotic spindle and aneuploidy in human oocytes.
- free to read
- review
Biological Foundation Models for Complex Disease Research and Clinical Translation
ai note: Biological foundation models for complex disease research are central to AI in biology.
- free to read
- review
Lamin A/C depletion from myofibers and satellite cells in mice reveals selective muscle pathology
ai note: Investigates Lamin A/C depletion in mouse skeletal muscle, directly relevant to postmitotic nuclear-lamina assembly and G1 genome organization.
- free to read
- preprint
A world model of the virtual cell
ai note: Proposes a 'world model' for a virtual cell, aligning with AI and machine learning in cell biology interests.
- free to read
- review
A practical risk framework for large language model use in life science research
ai note: Focuses on AI and large language models in life science research, directly aligning with the lab's interest in AI applications.
- free to read
An agentic AI framework connecting language models to electronic health records and a biomedical knowledge graph for real-world evidence
ai note: Agentic AI connecting LLMs to EHRs and knowledge graphs for real-world evidence.
- free to read
ELISA (Embedding-Linked Interactive Single-cell Agent): an interpretable hybrid generative Artificial Intelligence agent for expression-grounded discovery in single-cell genomics
ai note: AI agent for single-cell genomics, using foundation models and LLMs for biological discovery, highly relevant to AI interest.
- free to read
Toward autonomous science with agentic artificial intelligence
ai note: Central to AI and machine learning in biology, specifically autonomous science agents.
- review
Evaluating Sequence Foundation Models for Insect Olfactory Gene Discovery: Failure Modes, Evidence Standards, and a Benchmark Agenda
ai note: AI applied to insect gene discovery is relevant to AI in cell biology and aging, and insects.
- free to read
- review
Nuclear envelope buffering of cytoskeletal force stabilizes chromosome interactions in C. elegans meiosis
ai note: Investigates nuclear envelope mechanics and chromosome interactions during meiosis in C. elegans, highly relevant.
- free to read
- preprint
Phase separation of DUX family proteins drives totipotent-like state via 3D genome reorganization and retrotransposon activation
ai note: Phase separation in totipotency and genome organization is highly relevant to spindle matrix and phase separation interests.
- free to read
BOTANIC-1: a series of long-context plant genomic foundation models in the agentic era
ai note: AI applied to plant genomics, relevant to AI and machine learning in biology interest.
- free to read
- preprint
The Role of Broad in Regulating Border Cell Migration During Drosophila Oogenesis
ai note: Directly relevant to oogenesis and cell division in Drosophila, focusing on gene regulation during oocyte development.
Scaling recipes for single-cell RNA sequencing foundation models: when do scaling laws hold?
ai note: Investigates scaling laws for single-cell RNA sequencing foundation models, directly relevant to AI and machine learning in cell biology.
- free to read
- preprint
Dataset Readiness Assessment With Large Language Model (DRAFT-LLM): A Multi-Axis Audit Guided by LLM
ai note: Relevant to AI and machine learning in biology, focusing on dataset auditing for ML models.
Genome-wide-scale prediction of compound-protein interactions using foundation and language models based on three-dimensional structures of compounds and proteins
De novo Rubisco design with protein language models
ai note: Central to AI in biology, specifically using protein language models for de novo protein design.
- free to read
- preprint
Stepwise reorganization of chromosome conformation and nuclear organization during stem cell differentiation
ai note: Directly relevant to postmitotic nuclear-lamina assembly and G1 genome organization, and LAD remodeling.
- free to read
- preprint
The Meiotic Spindle, Mechanisms of Chromosome Segregation and Aneuploidy in Aging Human Oocytes: An Update Review
ai note: Discusses the meiotic spindle and chromosome segregation in aging human oocytes, central to oogenesis and cell division interests.
- free to read
- review
A dynamic meiotic cohesin complex regulates synaptonemal complex assembly in Drosophila oocytes
ai note: Central to oogenesis, oocyte maturation, and meiosis in Drosophila.
- free to read
Lamin-ating the genome: quantitative gatekeeping of replication initiation
ai note: Central to postmitotic nuclear-lamina assembly and G1 genome organization, discussing lamin's role in replication initiation.
- free to read
BaseCamp --- An Agentic AI Framework for Automating DNA Sequencing Data Pipelines
ai note: Agentic AI framework for automating DNA sequencing pipelines aligns with AI and machine learning in biology and AI agents.
- free to read
- preprint
Signaling Cascades in Meiotic Chromosome Dynamics
ai note: Central to oogenesis, oocyte maturation, and meiosis in the female germline.
- review
Predicting cellular responses to perturbation across diverse contexts with State
ai note: Central to AI in biology, focusing on predicting cellular responses to perturbation and generalizing across contexts.
- free to read
At the nucleus of neuronal health: Drosophila insights into LaminB-dependent homeostasis in aging and cell death
ai note: Central to postmitotic nuclear-lamina assembly and G1 genome organization, specifically LaminB in aging neurons.
- free to read
- cites our lab
Light-induced spindle assembly through Aurora A clustering
ai note: Directly relevant to spindle matrix and phase separation in cell division, specifically spindle assembly.
- free to read
- cites our lab
How Mechanical Forces at the Nuclear Envelope Regulate Yki/YAP Localization
ai note: Directly relevant to nuclear lamina, genome organization, and mechanical forces in gene regulation.
- free to read
A Trust-Network-Based Federated Learning Framework for Multi-Center Aging Clock Prediction
ai note: AI for aging clocks and biological interpretation, relevant to AI and aging biology interest.
- free to read
- preprint
Predicting Root Colonization by Plant Growth-Promoting Rhizobacteria: Opportunities and Limits of Deep Learning
- free to read
- preprint
Exposure to di(2-ethylhexyl) phthalate and diisononyl phthalate alters the aryl hydrocarbon receptor signaling pathway in the ovary throughout reproductive aging in mice
World models for biomedicine
ai note: AI applied to cell biology and aging biology, specifically 'world models' for biological systems and interventions.
- free to read
scRep: A Latent-Space Self-Distilled Foundation Model for Single-Cell Representation Learning
ai note: Foundation model for single-cell RNA sequencing, central to AI in cell biology interest.
- free to read
- preprint
Artificial intelligence in biomarker discovery for diseases: diagnostic and therapeutic prospects
- free to read
- review
Advances in Machine Learning for Drug Repurposing: From Methodologies to Precision Medicine with Case Studies in COVID-19, Parkinson's Disease, and Cancer
How Generative Artificial Intelligence (GAI) reshapes students' creativity in higher education: A chain path modeling Study from "Exploration-Exploitation" to "Co-Creation-Reflection"
- free to read
Generative AI designs functional thiolation domains for reprogramming non-ribosomal peptide synthetases
- free to read
Preparing AI chatbots to respond to patient distress and suicidality in high-risk healthcare settings
- free to read
An operational perturbation proteomics-based virtual cell model
ai note: Presents a virtual cell model based on perturbation proteomics, directly relevant to AI and machine learning in cell biology.
Speciesformer learns conserved cellular states for cross-species generative virtual cell modeling
- free to read
- preprint
OmniVCBench: Benchmarking Evidence-Grounded Multimodal Reasoning Towards AI Virtual Cells
ai note: Introduces a benchmark for AI Virtual Cells, directly relevant to AI and machine learning in biology.
- free to read
- preprint
About artificial intelligence adoption in antiviral drug discovery: Thoughts after ICAR 39
- free to read
- review
Benchmarking single-cell foundation models for aging biology
- free to read
- preprint
Molecular Regulation of Primordial Germ Cell Specification and Implications for In Vitro Gametogenesis
ai note: Directly relevant to oogenesis, PGC specification, and in vitro gametogenesis, aligning with the female germline interest.
- free to read
Cloud-Based Artificial Intelligence Classification of Common Intracranial Tumors on Magnetic Resonance Imaging
- free to read
Guideline-Based Evaluation of Large Language Models in Psoriasis Treatment
Large language models and artificial intelligence for generating, simplifying, and enhancing outpatient clinic letters: A systematic review
- free to read
Multimodal Dementia Prediction With Large Language Models: Cross-Attention Over Text, Audio, and Image
- free to read
Nucleic Acid Foundation Models for siRNA Drug Design
Large language models for pneumonia detection in radiology reports via text analysis
- free to read
Large Language Model Performance on Multistep Clinical Cases: Comparative Study Across Question and Case Levels
- free to read
Variability among large language models in assessing CONSORT compliance of published randomized clinical trials
- free to read
ASAS-NANP SYMPOSIUM: MATHEMATICAL MODELING IN ANIMAL NUTRITION: The Evolution of Large Language Models and Their Impact on Animal Sciences
- free to read
Materials science in the era of large language models: a perspective† † Electronic supplementary information (ESI) available. See DOI: https://doi.org/10.1039/d4dd00074a
- free to read
- review
Using generative AI to draft fillable study guides for introductory biology: a practical instructor workflow
- free to read
Nursing, omics, and artificial intelligence: Precision health's trifecta
BFPSM: A biological language model-based framework for pathogenic synonymous mutation prediction
The economics of accuracy for medical reasoning with large language models
- free to read
Role of foundation models in data-driven tissue diagnostics
- free to read
Artificial intelligence literacy in Somali education: balancing opportunities, risks, and policy directions
- free to read
Image-Based Diagnosis of Oral Lesions: Performance of a Vision-Language Model versus Human Clinicians
- free to read
A Review on Applications of Artificial Intelligence (AI) in Monoclonal Antibody (mAb) Manufacturing
- free to read
- review
Utilization of a HIPAA-compliant large language model chatbot in an academic pediatric medical center
- free to read
Artificial Intelligence in the Design and Development of Nanoparticle Drug Delivery Systems: A Systematic Review
- free to read
- review
Drug-Target Interaction Prediction via Hierarchical Sequential Cross-Attention over Chemical and Protein Language Models
- free to read
- preprint
GLIMP: An Integrated Graph Neural Network-Large Language Model for Promoter Recognition
Artificial intelligence in economic evaluation: enhancing cost-effectiveness frameworks in precision pain treatment
- free to read
A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries
- free to read
Allosteric Pocket Prediction Based on Multi-modal Protein Language Models and Ensemble Learning
Strategies for integrating artificial intelligence and cognitive assessment to predict disability progression in relapsing-remitting multiple sclerosis: A model development study
- free to read
Evaluating large language models for lay summaries of radiology reports using tailored prompting strategies and mixed-method assessment
- free to read
Augmenting patient safety surveillance in radiation oncology with large language model-based root cause analysis: A proof-of-concept study
- free to read
KoopCell: Koopman-Based Generative Model for Learning Single-Cell Dynamics from Distribution Snapshots
- free to read
- preprint
Weighting Schedules Govern What and When Score-Based Generative Models Learn from Multimodal Data
- free to read
- preprint
Evaluating Artificial Intelligence, Peer, and Instructor Feedback Across Scientific Communication Assignments in Undergraduate Biology
- free to read
DiagnosticXchange: an open-source framework for evaluating safety, efficiency, and diagnostic reasoning in clinical AI systems
- free to read
worth a look 109
MBD3 Knockdown Promotes the Differentiation of Bovine iPSCs into Primordial Germ Cell-like Cells Associated with Altered Bivalent Modification of TGF-β-Related Genes
ai note: Investigates differentiation into primordial germ cell-like cells and epigenetic modifications, highly relevant to oogenesis and germline biology.
- free to read
Turning scientific research papers into interactive AI agents
ai note: AI agents from research papers, directly relevant to AI and machine learning in biology.
- free to read
Maternal age as a driver of genome instability: mechanisms linking aneuploidy, mutagenesis and mitochondrial dysfunction
ai note: Directly relevant to oogenesis, oocyte maturation, and genome instability in the female germline due to maternal aging.
- review
Meiotic kinetochore reconstitution identifies chromosome segregation factors
ai note: Focuses on meiotic kinetochore reconstitution and chromosome segregation in mammalian oocytes, highly relevant to oogenesis and cell division.
- free to read
- preprint
Role of the m6A methyltransferase Mettl16 in Drosophila development
ai note: Investigates RNA modification (m6A) and its role in gametogenesis and development in Drosophila, relevant to female germline and cell division.
- free to read
Gene-Chronos: parameter-efficient developmental time inference using a pretrained single-cell foundation model
ai note: Uses a foundation model for developmental time inference, aligning with AI in biology and cell biology interests.
- free to read
Changing minds: How AI is transforming the life sciences
ai note: Central to AI and machine learning in biology, discussing its transformative impact on life sciences.
The QxxR Motif of RNA Helicase Me31B Is Essential for Drosophila Female Fertility and Germline Development
ai note: This paper is central to the lab's interest in oogenesis and female germline development, investigating the role of an RNA helicase motif in Drosophila fertility.
- free to read
- preprint
Coordinated regulation of diverse F-actin organizations orchestrates F-actin pulses in the actomyosin network
ai note: F-actin organization in Drosophila oogenesis. Directly relevant to oogenesis and cell division.
- free to read
SIRT1 Silences L1 Retrotransposons by Stabilizing Heterochromatin-Modifying Complexes
ai note: SIRT1 silences L1 retrotransposons by stabilizing heterochromatin-modifying complexes including Lamin B1, directly relevant to LADs and gene regulation.
- free to read
Establishment of a 3D Co-Culture System Using OFT Cell Line and Effect of Hormone Supplementation on Germline Gene Expression in Olive Flounder (Paralichthys olivaceus)
ai note: This paper is highly relevant to the lab's interest in oogenesis and the female germline, focusing on in vitro culture systems for olive flounder germline cells.
- free to read
Multiscale Regulation of Meiotic Recombination in Mammals
ai note: Central to oogenesis and meiosis, discussing meiotic recombination regulation in mammals.
Protocol for Duplex Sequencing of Mitochondrial DNA in Single Human Oocytes
ai note: Directly relevant to oogenesis, oocyte maturation, and mtDNA analysis in human oocytes.
Chromatin remodeling coordinates chromosome compaction, synaptonemal complex architecture and meiotic crossing-over
ai note: Directly relevant to meiosis, chromosome organization, and fertility in mammals.
- free to read
- preprint
Artificial Intelligence, Limits and the Healthy Aging
ai note: Directly addresses AI and healthy aging, a core interest.
- free to read
Role of the m6A methyltransferase Mettl16 in Drosophila development
ai note: Investigates Mettl16 in Drosophila development, directly relevant to oogenesis and female germline interests.
- free to read
Single-cell DNA methylation profiling reveals epigenetic signatures associated with in vitro maturation of bovine oocytes and conserved patterns with porcine oocytes
ai note: Investigates oocyte maturation, epigenetics, and conserved patterns, highly relevant.
- free to read
Expression and positive impact of omentin-1 on in vitro porcine oocyte maturation via the ERK1/2 and PRKAA1
ai note: Investigates oocyte maturation and its regulation by omentin-1, directly relevant to oogenesis and female germline biology.
- free to read
Decoding gene regulation in plant genomes with artificial intelligence
ai note: AI for gene regulation in plants. Relevant to AI in biology and gene regulation, but not specific lab interests.
- free to read
Germ granules act as repositories for RNA and protein molecules essential for zebrafish germline development
ai note: Central to oogenesis and female germline biology, focusing on germ granules and RNA/protein regulation in zebrafish germline development.
- free to read
- preprint
Interaction of light-dark and dietary cues prime Drosophila ovarian stem cell properties by precisely tuning Drp1 recruitment and organization on mitochondria
ai note: Focuses on oogenesis, germline stem cells, and mitochondrial regulation in Drosophila, directly aligning with oogenesis and cell division interests.
- free to read
- preprint
NEMP1 organizes the meiotic telomere–LINC interface to control chromosome movement and telomere integrity
ai note: Central to oogenesis, meiotic telomeres, and chromosome dynamics in mammalian oocytes.
- free to read
- preprint
TRIM28 regulates the G2/M transition via histone modification and DNA damage repair during mouse oocyte meiosis
ai note: Investigates TRIM28's role in mouse oocyte meiosis, directly relevant to oogenesis and oocyte maturation.
Novel and recurrent TUBB8 variants cause irreversible meiotic spindle defects and refractory ART failure in Chinese women with oocyte maturation arrest
ai note: Oocyte maturation arrest due to meiotic spindle defects is central to oogenesis and female germline.
MicroRNAs as Regulators of Reproductive Function: From Gametogenesis to Pregnancy
ai note: MicroRNAs in gametogenesis and oocyte maturation are central to oogenesis interests.
- free to read
- review
Maternal DNA repair safeguards genome stability during the oocyte-to-embryo transition
ai note: Central to oocyte biology, DNA repair, genome stability during oocyte-to-embryo transition, and de novo mutations.
Dynamic Remodeling of Oocyte-Granulosa Cell Communication During Bovine Folliculogenesis Revealed by Transcriptomic Meta-Analyses
ai note: Oocyte-granulosa cell communication during bovine folliculogenesis. Directly relevant to oogenesis and female germline biology.
- free to read
Decoupling Transcription from Cell Fate Preserves Germ Cell Totipotency
ai note: Relevant to germ cell totipotency and transcriptional regulation in development.
- free to read
- preprint
Transcriptome profiling identifies the chromatoid body as a dynamic center for RNA surveillance and transcript sorting during spermatogenesis
ai note: Central to oogenesis and germline biology, focusing on RNA surveillance and transcript sorting in the chromatoid body during spermatogenesis.
- free to read
- preprint
A Hox-dependent anchoring mechanism mediates transcriptional repression of autophagy-related genes at the nuclear periphery
ai note: Directly relevant to LAD remodeling and transcriptional regulation by tethering genes to the nuclear periphery.
- free to read
Developmental remodeling of ping-pong piRNA amplification in the vertebrate female germline
ai note: Central to oogenesis, oocyte maturation, and the female germline, focusing on piRNA amplification in vertebrates.
- free to read
- preprint
A network of steroid receptor transcription factors regulates ovarian chromatin remodeling in the transition to ovulation
ai note: Central to oogenesis, focusing on chromatin remodeling, transcription factors, and the transition to ovulation in the ovary.
- free to read
LucaCell: a sequence-centric foundation model for cross-species single-cell analysis
ai note: Sequence-centric foundation model for cross-species single-cell analysis is central to AI in biology and cell biology.
- free to read
- preprint
ZEP1 orchestrates template choice and crossover pathways to ensure meiotic genome integrity in rice
ai note: Focuses on meiotic crossovers and synaptonemal complex, highly relevant to oogenesis and meiosis.
- free to read
How 'Foundational' Are Current Molecular Foundation Models?
ai note: Discusses foundational models in molecular sciences, relevant to AI and machine learning in biology.
- free to read
- preprint
The Small but Versatile Cyclin-Dependent Kinase Subunit CKS: C. elegans CKS-1 Regulates Anaphase Onset and Is Required for Anaphase B During Oocyte Meiosis
ai note: CKS subunit in C. elegans oocyte meiosis. Directly relevant to oogenesis and cell division.
- free to read
- review
Mammalian condensin I controls higher-order chromosome organization and homologous recombination in meiotic prophase I
ai note: Directly relevant to chromosome organization in meiosis, homologous recombination, and fertility, aligning with cell division interests.
- free to read
- preprint
Cnidarian oocytes reveal conserved actin-driven mechanisms of female meiosis
ai note: Studies actin-driven mechanisms in cnidarian oocyte meiosis, directly relevant to oogenesis and cnidarian models.
- free to read
- preprint
How AI Can Advance Mathematical Biology: Opportunities, Challenges, and Future Directions
ai note: Discusses AI and ML in mathematical biology, relevant to AI and machine learning in biology interest.
- free to read
- review
Reimagining research papers as interactive and reliable AI agents
ai note: AI agents from research papers, directly relevant to AI and machine learning in biology.
- free to read
Microwell platform for single-cell applications and future integration with artificial intelligence (AI)
ai note: Discusses microwell platforms for single-cell analysis and integration with AI, relevant to AI in cell biology.
- review
Artificial intelligence-guided engineering of precision ocular therapeutics
ai note: AI for ocular therapeutics, relevant to AI in cell biology and aging.
Partial amelioration of CPC-induced oocyte defects following melatonin supplementation
ai note: Directly relevant to oocyte defects, spindle morphology, and potential interventions.
The mouse oocyte Balbiani body reassembles in growing follicles to continue organelle selection and upon dispersal influences nuclear position
ai note: Central to oogenesis and oocyte biology, specifically the Balbiani body in mouse oocytes.
- free to read
- preprint
LAMBDA: a prophage detection benchmark for genomic language models
ai note: AI benchmark for genomic language models, relevant to AI in biology interest.
- free to read
To fuse, or not to fuse: Closing in on the nuclear envelope fusion machinery
ai note: Discusses nuclear envelope fusion machinery, relevant to postmitotic nuclear-lamina assembly and G1 genome organization.
Phase Separation of SF3B1 Serves as a Critical Post-Transcriptional Regulator During Early Mouse Embryogenesis
ai note: Covers phase separation in early mouse embryogenesis and its role in development, highly relevant.
- free to read
Liquid-Liquid Phase Separation-Enhanced Multienzyme Catalysis: Mechanisms and Applications
ai note: Directly relevant to liquid-liquid phase separation in catalysis and artificial systems.
- free to read
- review
Ovarian expression and function of neuropeptide systems in teleosts and anurans
ai note: Focuses on ovarian function and oocyte maturation in teleosts and anurans, aligning with oogenesis interest.
- review
Artificial intelligence applications in biofilm research: computational approaches for biofilm analysis and antimicrobial prediction
ai note: AI applied to biofilm analysis and antimicrobial prediction is relevant to AI in biology interest.
- free to read
- review
Multiple mechanisms cooperate to control PUF protein FBF-1 and FBF-2 accumulation in Caenorhabditis elegans germline
ai note: Central to oogenesis and germline biology, focusing on regulation of RNA-binding proteins in C. elegans germline.
Sequential miRNA-mRNA profiling of regulatory pathways during in vitro maturation of canine oocytes
ai note: Directly studies in vitro maturation of canine oocytes, including miRNA-mRNA profiling.
- free to read
Network biology to artificial intelligence: building the next generation of predictive drug discovery
ai note: AI for drug discovery, relevant to AI interest but not directly cell biology or aging.
- free to read
- review
Artificial intelligence and biosecurity: capabilities, threat pathways, and defense-in-depth governance
ai note: AI and biosecurity, discussing capabilities and threats in biological research. Relevant to AI interest.
- free to read
- preprint
An atlas of the C. elegans starvation response reveals that transcription is necessary to initiate transcriptional silencing in quiescent primordial germ cells
ai note: Studies C. elegans germ cells and transcriptional silencing during starvation, relevant to oogenesis and cell biology.
- free to read
- preprint
Overweight/Obesity and Hyperinsulinemia Impair Oocyte Developmental Competence via Cumulus Cell Dysfunction and Oxidative Stress-Mediated Follicular Microenvironment Remodeling
ai note: Directly relevant to oogenesis, oocyte competence, and the follicular microenvironment in the context of obesity.
- free to read
Environment-Aware DNA Language Model for Stress-Responsive Genomic Prioritization in Maize
ai note: AI (DNA language model) for stress-responsive genomic prioritization in maize. Relevant to AI and genomics.
- free to read
- preprint
Artificial Intelligence in Burn and Wound Care: Image Analysis, Prediction, and Clinical Integration
ai note: AI in burn and wound care is relevant to AI in biology and aging.
- free to read
- review
The impact of endocrine disrupting chemicals diethylstilbestrol and ketoconazole on lipid storage in in vitro matured bovine cumulus-oocyte complexes†
ai note: Examines the impact of endocrine disruptors on lipid storage in bovine cumulus-oocyte complexes during maturation.
- free to read
Endocrine and Molecular Mechanisms of Oocyte Aging: From Gonadotropin Signaling to Metabolic and Microenvironmental Dysfunction
ai note: Central to oocyte aging, covering mechanisms from gonadotropin signaling to metabolic and microenvironmental dysfunction, highly relevant to oogenesis.
- free to read
- review
Generative large language models in medicine: a scoping review of recent methodological advances
ai note: Reviews methodological advances in generative LLMs in healthcare, relevant to AI in biology interest.
- free to read
- review
TBPL2-dependent transcription controls RNA stability and cellular organization in growing oocytes
ai note: Focuses on oocyte growth, transcription, and cellular organization, directly relevant to oogenesis and female germline interests.
- free to read
- preprint
Genolator enables protein function interpretation using a multimodal large language model fusing genomic and structural interpretation with natural language interaction
ai note: AI (multimodal LLM) applied to protein function interpretation, relevant to AI in biology.
- free to read
Sampling protein language models for functional protein design
ai note: Protein language models for functional design are relevant to AI in biology.
Discover, Falsify, Revise: Auditing Input-Use Claims from Source Code to Predictive Contribution in Agent-Discovered Cell Models
ai note: AI agents for cell models and auditing input-use claims directly aligns with AI and machine learning in biology and virtual cells.
- free to read
- preprint
MI-PEFT: Mixture-of-Experts Integrated Parameter-Efficient Fine-Tuning Protein Language Models Improves Acidophilic Proteins Classification
ai note: Applies AI to protein classification, relevant to AI in biology and potentially protein function.
- free to read
- preprint
Artificial intelligence-driven drug discovery: a deep learning paradigm shift in pharmaceutical research and development
ai note: AI for drug discovery, relevant to AI interest but not directly cell biology or aging.
- free to read
- review
Modified meiosis in the tardigrade Hypsibius exemplaris maintains heterozygosity across the genome
ai note: Discusses modified meiosis and heterozygosity maintenance in asexual reproduction, highly relevant to oogenesis and germline biology.
- free to read
RAGCell: Retrieval-Augmented Generation as Supervision for Versatile Single-cell Analysis
ai note: AI for single-cell analysis using retrieval-augmented generation, relevant to AI in biology interest.
- free to read
- preprint
Spermidine ameliorates homosalate-induced mouse oocyte defects via regulation of mitochondria and cytoskeleton
ai note: Focuses on mouse oocyte defects, mitochondria, cytoskeleton, and environmental stressors, aligning with oogenesis interests.
- free to read
Evaluating Sequence Foundation Models for Insect Olfactory Gene Discovery: Failure Modes, Evidence Standards, and a Benchmark Agenda
ai note: AI for gene discovery in insects, relevant to AI in biology and potentially oogenesis.
- free to read
- review
Epigallocatechin Gallate From Tea Delays Oocyte Aging After Ovulation in Mice
ai note: Directly relevant to oogenesis and oocyte maturation, investigating EGCG's role in delaying post-ovulatory oocyte aging in mice.
- free to read
Enhancing the Oocyte Ultrastructure and Antioxidant Defence System of In Vitro Matured Buffalo Oocytes via Resveratrol Supplementation
ai note: Central to oogenesis and oocyte maturation, investigating resveratrol's effects on buffalo oocytes.
- free to read
AI virtual cells for drug discovery and pharmacology
ai note: AI virtual cells for drug discovery and pharmacology, relevant to AI in biology and cell biology.
- review
Foundation Models for Microbiome Research: From Sequence Semantics to Community Dynamics and Multimodal World Models
ai note: Relevant to AI and machine learning in biology, specifically foundation models for microbiome research.
- free to read
- review
Language-encoded network topology enables large language models to reason about complex networks
ai note: AI for reasoning about biological networks, relevant to AI in biology and genomics.
- free to read
- preprint
When Cancer Research Met Artificial Intelligence: From Machine Learning to Intelligent Oncology
ai note: Discusses the intersection of cancer research and AI, relevant to AI in biology, though cancer is not a primary focus.
- free to read
Artificial Intelligence for Alzheimer's Disease Diagnosis: From Traditional Machine Learning to Large Language Models
ai note: AI applied to biology (Alzheimer's diagnosis), but not cell biology or aging.
- free to read
- review
From assistant to collaborator: A systematic review of the evolution of artificial intelligence in end-stage renal disease care and management
ai note: AI applied to healthcare, specifically end-stage renal disease. Relevant to AI interest, but not cell biology or aging.
- free to read
RNA m⁶A modification and its regulatory factors are altered in granulosa cells from women with PMOS
ai note: Relevant to oogenesis and infertility, specifically focusing on RNA modification in granulosa cells.
Identification of differential topologically associating domains from low sequencing depth and pseudobulk chromatin contact maps
ai note: Relevant to genome organization, but not specifically to the lab's interests in lamina-associated domains or cell division.
A germline-specific reporter reveals conserved primordial germ cell developmental dynamics between jawless and jawed fish species
ai note: Develops a germline-specific reporter in lamprey and zebrafish, directly addressing conserved PGC dynamics and evolutionary origins of the germline.
- free to read
- preprint
Human umbilical cord mesenchymal stem cell-derived exosomes ameliorate ovarian aging by inhibiting ferroptosis
ai note: Relevant to oogenesis and aging, specifically ovarian aging and oocyte quality, using exosomes.
Lysine-specific demethylase 3A (KDM3A) protects against ovarian dysfunction in premature ovarian insufficiency by transcriptional activation of ATP-binding cassette sub-family A member 7 (ABCA7)-mediated mitochondrial homeostasis
ai note: Directly relevant to oocyte quality and ovarian function in premature ovarian insufficiency, aligning with oogenesis and female germline interests.
- free to read
Age-specific optimization of ovarian superstimulation, oocyte maturation, and somatic cell nuclear transfer in juvenile and adult goats
ai note: Investigates ovarian superstimulation and oocyte maturation in goats, directly relevant to oogenesis and female germline biology.
Toward AI Virtual Cells for Hepatology: Representation, Generation, Dynamics, and Intervention in Single-Cell Models
- free to read
TurboID proximity labeling reveals protein interaction networks for germline Argonautes
ai note: Central to germline biology and gene regulation in C. elegans, focusing on germ granules and Argonautes.
- free to read
- preprint
Mechanistic Interpretability of Protein Language Models Reveals Encoded Structural and Functional Properties of Intrinsically Disordered Proteins
ai note: AI applied to protein structure and function, relevant to AI in biology interest.
- free to read
- preprint
Mitochondrial Ca2+ homeostasis in ovarian function and oocyte competence: from molecular transporters to early embryonic development
ai note: Central to oogenesis and oocyte competence, discussing mitochondrial Ca2+ homeostasis and its impact on development.
- free to read
- review
Artificial intelligence in reproductive medicine and education: current evidence, challenges, and future directions
ai note: AI in reproductive medicine and education. Relevant to AI in biology and cell division (embryology), but focus is education/clinical.
- review
Attempts to investigate what words trivia experts focus on in quiz questions: Human-AI comparison through "LLM-as-a-judge" approach
- free to read
Ultrastructure of Vitellogenic Ovarian Follicles and Morphogenesis of the Oocyte Envelope in the Eurasian Ruffe (Gymnocephalus cernua Linnaeus 1758) (Teleostei, Perciformes)
ai note: Detailed ultrastructure and morphogenesis of vitellogenic ovarian follicles in a fish species, central to oogenesis.
- free to read
Differential effects of alcohol-derived serum metabolites and direct ethanol exposure on mouse preantral follicle development
ai note: Central to oogenesis and oocyte biology, investigating alcohol effects on mouse follicle development.
Bridging trust and performance in intelligent systems: Hybrid explainable AI approaches for interpreting large language models
ai note: Explainable AI for LLMs, relevant to AI in biology and potentially useful for analyzing biological data.
- free to read
Therapeutic effects of exosome‑based hyperin delivery in a cyclophosphamide‑induced mouse model of diminished ovarian reserve
ai note: Relevant to diminished ovarian reserve and potential therapeutic strategies for oogenesis.
- free to read
5-oxoproline supplementation enhances maturation and developmental competence of low-quality porcine cumulus-oocyte complexes during in vitro maturation
ai note: Relevant to oocyte maturation and developmental competence in a porcine model.
Regulation of immune signal integration and memory by inflammation-induced chromosome conformation
ai note: 3D genome conformation in immune cells, relevant to genome organization and AI applications.
- free to read
Computational structural insights into alternative proteins: The impact of AlphaFold and AI-based prediction
ai note: AI for protein structure prediction is relevant to AI in biology interest, but not central.
- review
Mitochondrial Ca2+ homeostasis in ovarian function and oocyte competence: from molecular transporters to early embryonic development
ai note: Directly addresses mitochondrial function in ovarian function and oocyte competence, highly relevant to oogenesis.
- free to read
- review
Mitochondria-targeted therapeutic strategies in assisted reproduction: challenges and potential solutions
ai note: Focuses on mitochondria in oocyte competence and assisted reproduction, highly relevant to oogenesis and aging.
- review
Of Silicon and Cells: Ethical and Safety Concerns of AI Usage in the Life Sciences
- free to read
- preprint
Convergent Emergence of In-Context Learning Across Modalities
ai note: AI and in-context learning across different biological modalities, relevant to AI in biology interest.
- free to read
- preprint
Prediction of Atrial Fibrillation Risk Through the Integration of Genetic Information and Artificial Intelligence‐Based Electrocardiogram Data
- free to read
An integrated explainable AI framework with counterfactual optimization for decision support
- free to read
A universal visual foundation model for computational cytopathology
Association Between Large Language Model-Derived Mobility Functional Status Assessment and Clinical Outcomes
Generation of eight-cell embryo-like cells from human pluripotent stem cells
ai note: Central to oogenesis and early development, generating embryo-like cells from stem cells.
- review
Decoding RNA-Dependent Protein Phase Separation Using an Ensemble-Based Deep Learning Framework Integrating ProtBERT Embeddings With Physicochemical Features
The Role of Artificial Intelligence and Machine Learning in Revolutionizing Probiotic Research
- free to read
- review
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